CV
Employments
2021 - now: PhD fellow
Faculty of Biosciences, Norwegian University of Life Sciences, Ås, Norway.
- Development of large scale bioinformatic pipelines for genomics and proteomics.
- Network analysis and integration of multi-omic data.
- Researching fundamental questions in host-microbe interactions.
- Design and setup of custom computational platforms.
- Conference talks and outreach.
- Oral presentations at AusME 2022, CGIF 2024, AHC 2024.
- International collaborations.
- Visiting researcher at UQ/ACE, QUT/CMR, CSIRO/Livestock.
- Development of teaching material and bioinformatic training of Master’s students.
- BIO326 “Genomsekvensering; verktøy og analyser” 2023-2024, Development of dry-lab course material and exercises.
July 2020 - July 2021: Lead Bioinformatician
Department of Clinical Microbiology, Aarhus University Hospital, Skejby, Denmark.
- Infection tracking and surveillance of carbapenemase and vancomycinase producing entero-bacteria.
- Development of pipeline and phylodynamic analysis for governmental large scale sequencing of SARS-CoV-2.
- Teaching and communication across a diverse field professionals.
- Course in Microbiology for MDs specializing in Microbiology “Rapid long-read sequencing of clinical isolates”.
- Management of student employees.
- Co-authorship of several research papers.
2019 - 2020: Student bioinformatician
Department of Clinical Microbiology, Aarhus University Hospital.
- Development of bioinformatics pipelines for assembly and comparison of genomes from microbial isolates.
- Co-authorship of several research papers.
Studies
2018 - 2020: Master’s degree (MSc) in Bioinformatics
Bioinformatics Research Centre (BiRC), Aarhus University (AU).
- Implementation of string algorithms for phylogenetic analysis, GWAS, genomics, molecular evolution.
- Application of statistical methods and clustering techniques on DNA and expression-data.
- Completion of various scientific projects, including sex-chromosome evolution and parallel optimization of linear time algorithms.
- Master’s thesis about GC-bias in gene conversion. “GC-biased Gene Conversion (gBGC) in Rhizobium leguminosarum”.
2015 - 2018: Bachelor’s degree (BSc) in Biology
Department of Bioscience, Faculty of Natural Sciences, Aarhus University (AU)
- Exchange, 6 months at Manipal University (MAHE), Karnataka, India 2018.
- Fluent english and intercultural relations.
- Bachelor’s project in bioinformatics on sex-chromosome evolution in higher apes.
- More than one year full time equivalents in bioinformatics courses (BiRC).
- Tutor for new students for two freshmen batches (years 2016 and 2018).
Skills
- Programming languages, sorted by descending fluency: Python, R, Bash, C, Java.
- GNU/Linux, Conda, containerization.
- Designing and upgrading workstations for specific bioinformatic needs. Hardware/software/network/user integration.
- HPC Distributed Resource Management: Slurm, Drmaa, Snakemake etc.
- Git version control.
- Cryptographic handling of sensitive data.
Languages
- Native Danish.
- Fluent English.